The development of water resources in Nigeria has not risen alongside population increase. Although groundwater is the available source of water at all locations in Nigeria, groundwater aquifer is becoming deeper due to increased groundwater harvest, especially in urban areas. There is a need for continuous groundwater modelling using geological, climatic, environmental data, and spatial tools especially under climate change and intense landcover conversions. The Spatial Multi-Criteria Analysis (SMCA) was adopted in this study to model the current groundwater potential in Nigeria. The multi-criteria analysis tool in ArcGIS was explored to overlay the nine factor maps to model historic and futuristic groundwater potentials. Our groundwater factor maps show an interesting pattern across Nigeria, the southern parts show more potential considering suitability factors like; surface water density, rainfall, temperature, soil, land cover and elevation in the region. Whereas the upland regions even with higher rainfall and lower temperatures suitable for groundwater recharge, are disadvantaged by geomorphological factors. Northern part of Nigeria shows high potentials, considering the geology, soil, lineament density and slope, but disadvantaged by other factors like lower rainfall and higher temperatures. This informed the final groundwater potential maps; results for the historic potential revealed that, no location in Nigeria has optimal (9–10), very poor or no (1–2) groundwater potential. The results further revealed that areas with higher groundwater potentials are largely within the corridors of major rivers in Nigeria (Niger and Benue), covering about 17.6% of the Nigerian landmass, while 2.6%, 33.7, 44% and 2.2% are occupy areas with very low, low, moderate and very high groundwater potentials respectively. Further analysis highlighs locations of concern due to climatic and environmental changes. Interestingly, our groundwater projection results show a persistent increase in groundwater potential from 2021 to 2100 if current landuses and environmental factors are maintained, and if the projected increase in rainfall is true. Despite these groundwater potentials, the recent issues of shallow aquifers have been cautioned by scientists, especially due to groundwater uncertainties in Nigeria especially with intense landcover conversions, combined with accelerated water demands due to increase in population, and incessant groundwater extractions. Therefore, there is a need to seek caution in the pattern of unregulated and incessant groundwater harvest in Nigeria and we recommend frequent updates of the groundwater potential using geospatial tools to inform governing policies on a centralised consolidated sustainable water supply in Nigeria.